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wbiD wbiD wbiA wbiA wbiC wbiC wzt wzt wzm wzm wbiB wbiB wbiE wbiE rmlA rmlA wbiF wbiF rmlC rmlC rmlD rmlD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
wbiDPreviously sequenced as Burkholderia pseudomallei putative O-antigen methyl transferase WbiD SWALL:O69125 (EMBL:AF064070) (574 aa) fasta scores: E(): 0, 99.65% id in 574 aa. Also similar to Burkholderia mallei putative O-antigen methyl transferase WbiD SWALL:Q9AEV1 (EMBL:AY028370) (574 aa) fasta scores: E(): 0, 99.47% id in 574 aa and to Rhizobium loti putative O-antigen methyl transferase mlr7341 SWALL:Q986I5 (EMBL:AP003011) (664 aa) fasta scores: E(): 3.9e-75, 39.27% id in 555 aa. (574 aa)    
Predicted Functional Partners:
wbiA
Putative O-antigen acetylase; Previously sequenced as Burkholderia pseudomallei putative O-antigen acetylase WbiA SWALL:O69122 (EMBL:AF064070) (412 aa) fasta scores: E(): 3.9e-175, 100% id in 412 aa. Also similar to Burkholderia thailandensis O-antigen acetylase WbiA SWALL:Q93SI5 (EMBL:AY033501) (412 aa) fasta scores: E(): 4.5e-166, 94.9% id in 412 aa.
 
   
 0.955
wbiC
Putative glycosyl transferase; Previously sequenced as Burkholderia pseudomallei putative glycosyl transferase WbiC SWALL:O69124 (EMBL:AF064070) (307 aa) fasta scores: E(): 7e-121, 100% id in 307 aa. Also similar to Rhizobium loti putative glycosyl transferase mlr7339 SWALL:Q986I6 (EMBL:AP003011) (296 aa) fasta scores: E(): 5.3e-54, 48.82% id in 297 aa.
 
  
 0.950
wzt
ABC transporter, ATP-binding component; Previously sequenced as Burkholderia pseudomallei putative ABC-2 transporter hydrophilic component Wzt SWALL:O69121 (EMBL:AF064070) (469 aa) fasta scores: E(): 2.1e-157, 100% id in 469 aa. Also similar to Burkholderia mallei putative ABC-2 transporter hydrophilic component Wzt SWALL:Q9AEV3 (EMBL:AY028370) (469 aa) fasta scores: E(): 1.7e-156, 99.57% id in 469 aa and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa1386 SWALL:Q9I3V8 (EMBL:AE004568) (422 aa) fasta scores: E(): 5.3e-35, 40.04% id in 427 aa.
 
   
 0.891
wzm
Identical to Burkholderia mallei putative ABC-2 transporter integral membrane component Wzm SWALL:Q9AEV4 (EMBL:AY028370) (277 aa) fasta scores: E(): 3.9e-105, 100% id in 277 aa. Similar to Serratia marcescens putative ABC transporter system integral membrane protein SWALL:O52482 (EMBL:AF038816) (277 aa) fasta scores: E(): 2.5e-58, 57.46% id in 268 aa.
 
   
 0.858
wbiB
Previously sequenced as Burkholderia pseudomallei putative epimerase/dehydratase WbiB SWALL:O69123 (EMBL:AF064070) (363 aa) fasta scores: E(): 1e-138, 100% id in 363 aa. Also similar to Burkholderia mallei putative epimerase/dehydratase WbiB SWALL:Q9AEV2 (EMBL:AY028370) (363 aa) fasta scores: E(): 2.1e-138, 99.72% id in 363 aa and to Rhizobium loti putative sugar nucleotide epimerase/dehydratase mlr7558 SWALL:Q985R8 (EMBL:AP003012) (352 aa) fasta scores: E(): 1.3e-76, 57.71% id in 350 aa.
 
   
 0.792
wbiE
Putative glycosyl transferase; Previously sequenced as Burkholderia pseudomallei putative glycosyl transferase WbiE SWALL:O69126 (EMBL:AF064070) (613 aa) fasta scores: E(): 0, 99.51% id in 613 aa.Also similar to Burkholderia mallei putative glycosyl transferase WbiE SWALL:Q9AEV0 (EMBL:AY028370) (613 aa) fasta scores: E(): 0, 99.67% id in 613 aa.
 
   
0.745
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.738
wbiF
Putative glycosyl transferase; Previously sequenced as Burkholderia pseudomallei putative glycosyl transferase WbiF SWALL:O69127 (EMBL:AF064070) (276 aa) fasta scores: E(): 2e-117, 99.63% id in 276 aa. Also similar to Burkholderia mallei putative glycosyl transferase WbiF SWALL:Q9AEU9 (EMBL:AY028370) (276 aa) fasta scores: E(): 1.7e-116, 98.91% id in 276 aa and to Ralstonia solanacearum probable glycosyl transferase protein rsc0688 or rs01593 SWALL:Q8Y1K2 (EMBL:AL646060) (275 aa) fasta scores: E(): 7.4e-23, 32.46% id in 268 aa.
  
  
 0.735
rmlC
dTDP-6-deoxy-D-glucose-3,5 epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.709
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.698
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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